Bookkeeping for contractors and service businesses in MetroWest and Greater Boston.

Call or Text: (774) 277-8683

How do I pay subcontractors vs employees?

Employees and subcontractors get paid through completely different processes. Getting this wrong creates tax problems, penalties, and potential legal exposure. Here’s how each works.

Employees must be paid through payroll. You withhold federal income tax, state income tax, Social Security, and Medicare from each paycheck. You also pay the employer portion of FICA taxes plus unemployment taxes. Before their first paycheck, collect a W-4 for withholding elections and an I-9 to verify work eligibility. Employees need to be covered by workers’ compensation insurance in Massachusetts.

The payroll process runs on a set schedule, whether weekly, biweekly, or semi-monthly. Each pay period you calculate gross wages, apply withholdings, and remit net pay. Payroll taxes get deposited on schedule and filed quarterly on Form 941. At year end, you issue W-2s to each employee.

Subcontractors work differently. You pay them directly with no withholdings. They invoice you for work completed, and you pay the invoice amount in full. No payroll taxes, no withholdings, no workers’ comp requirement on your end. The sub handles their own taxes as a self-employed individual or business.

Before you pay any subcontractor, collect a W-9 form. This gives you their legal name, address, and tax ID number. You need this information to file 1099-NEC forms at year end for any sub you paid $600 or more during the year. The deadline is January 31st. Miss it and you face penalties.

In your books, employee wages run through payroll accounts with separate tracking for wages, employer taxes, and benefits. Construction contractors often code labor to specific jobs so they can see true labor cost by project. Subcontractor payments hit expense accounts and should also be coded to jobs if you’re tracking job costs. The chart of accounts treatment reflects the legal distinction.

Massachusetts takes worker classification seriously. The state uses an ABC test that presumes workers are employees unless you can prove otherwise. The worker must be free from your control, perform work outside your usual business, and have an independently established trade. Misclassifying an employee as a subcontractor exposes you to back taxes, penalties, and potential lawsuits.

For small business bookkeeping in MetroWest Massachusetts, keeping employee and subcontractor records clean and separate matters. Your books need to clearly distinguish payroll expenses from subcontractor expenses. Your 1099 tracking needs to capture every sub payment throughout the year so January doesn’t become a scramble for W-9s you never collected.

If you’re unsure whether someone should be classified as an employee or subcontractor, get professional guidance before you start paying them. Reclassifying after the fact is expensive and complicated. Getting it right from the start is much easier.

Greater Boston's Trusted Bookkeeping Partner

The Next Step:
A Short Conversation

We'll ask a few questions, figure out what you need, and give you a straightforward quote.

More Questions

How do slow-paying customers hurt my cash flow?

Late-paying customers force you to finance their work with your own money, creating a gap between when you pay expenses and when you collect. This leads to vendor relationship strain, credit card interest charges, lost discounts, and decisions made under pressure instead of strategy.

Read answer

How do I migrate from QuickBooks Desktop to Online?

The migration uses Intuit's built-in export tool, but preparation and verification make the difference between a smooth transition and months of cleanup. Clean up your Desktop file first, reconcile all accounts, and plan for features that don't transfer.

Read answer

Do I need a bookkeeper who specializes in construction?

Probably yes, if you're running jobs with any complexity. General bookkeepers can reconcile accounts, but construction accounting requires job costing, progress billing, and retainage tracking that most generalists haven't developed.

Read answer

Can QuickBooks handle multiple businesses?

Yes, but each business needs its own separate company file or subscription. QuickBooks Online requires a separate subscription per entity, while QuickBooks Desktop allows multiple company files under one license.

Read answer

How do I find a reliable bookkeeper near me?

Start with referrals from other business owners, your accountant, or local business groups. Then evaluate candidates based on their process, industry experience, and communication style. Local knowledge and consistent delivery matter more than proximity alone.

Read answer

What should I look for in a bookkeeping service?

Look for industry experience, clear communication, and a defined monthly process. Technology fit and pricing transparency matter too. The right bookkeeper understands how your business operates and delivers consistent, on-time financials.

Read answer

Full-service bookkeeping firm serving contractors and small businesses in MetroWest and Greater Boston. From monthly bookkeeping to job costing and payroll, we bring 20 years of hands-on business experience to your back office. Locally owned in Bellingham, Massachusetts.

Client Reviews

5-Star Rated Firm

© 2026 Janek Business Solutions, LLC